Enterprise Architecture (EA) as a discipline that manages large amount of models and information about different aspects of the enterprise, can support decision making on enterprise-wide issues. In order to provide such support, EA information should be amenable to analysis of various utilities and quality attributes. In this regard, we have proposed the idea of characterizing and using enterprise architecture quality attributes. And this paper provides a quantitative AHP-based method toward expert-based EA analysis. Our method proposes a step-by-step process of assessing quality attribute achievement of different scenarios using AHP. By this method, most suitable EA scenarios are selected according to prioritized enterprise utilities and this selection has an important affect on decision making in enterprises. The proposed method also introduces a data structure that contains required information about quality attribute achievement of different EA scenarios in enterprises. The stored asset can be used for further decision making and progress assessment in future. Sensitivity analysis is also part of the process to identify sensitive points in the decision process. The applicability of the proposed method is demonstrated using a practical case study.